I don't know what the manual says since I don't have one handy, but on my machine you do the following.
Put switch in test position
Move gantry until brushes are in desired position
Leave in test position and hold reset button in until the horn blows (
app. 20 seconds)
Put switch back in run position and send gantry home
A couple of questions come to mind.
Is Hub-Scrub selected in the CMI?
Is the gantry trained to the track length?
HTH